CMP-Cy5-Sialic Acid Summary
Key Benefits
Learn more about Fluorescent Glycan Labeling and Detection
Formula |
C57H75N10O25P1S3 |
Molecular Weight |
1427.42 Da |
Formulation |
Lyophilized with Tris, pH 8.0 |
Stability & Storage |
Store the unopened product at < -20 °C. Good for 12 months from date of receipt. |
Applications
- Fluorescent labeling with Cy5 of free glycans as well as glycoproteins and glycolipids.
- Fluorescent detection of specific glycan epitopes on the cell surface.
- Quantitation of the sialylation level of specific glycans.
- Together with CMP-Cy3-Sialic Acid, allows for dual labeling and detection of sialoglycans.
Key Features and Benefits:
- Excitation at 649 nm and red emission at 671 nm.
- The fluorescent dye Cy5 is conjugated to the C9 position of sialic acid.
- Can be directly introduced into glycoproteins and glycolipids via various sialyltransferases.
- Can be introduced to live cells for glycan imaging.
- Has minimum side-effects on target molecules.
- Very convenient and user-friendly.
For Details:
Wu et al., (2019) Glycobiology 29: 750-754
Wu et al., (2020) Glycobiology 30:454-462
Related Reagents
Click Chemistry
- Biotinylated-Alkyne (ES100)
- GDP-Azido-Fucose (ES101)
- CMP-Azido-Sialic Acid (ES102)
- UDP-Azido-GalNAc (ES103)
- UDP-Azido-GlcNAc (ES104)
- CMP-Biotin-Sialic Acid (ES201)
Enzymes and detection reagents
- Various sialyltransferases
- Various neuraminidases/sialidases
Data Examples
Titration of CMP-C9-Biotin-Sialic Acid on Asialofetuin
Labeling bovine fetuin (Fet) using CMP-Cy5-Sialic Acid. Bovine fetuin was purified from crude fetuin by gel filtration. Samples of fetuin were labeled through O-glycans with Recombinant Human ST3GAL1 Protein (Catalog # 6905-GT) or N-glycans with Recombinant Human ST6GAL1 (aa 44-406) Protein (Catalog # 7620-GT). Control lanes contain all components but lack a labeling enzyme. Each lane contained 1 μg of fetuin except the controls. The control lanes contained 2 μg of protein. Samples exhibited greater labeling in the presence of Recombinant C. perfringens Neuraminidase Protein (Catalog # 5080-NM) (Neu, indicated with + and - signs), suggesting that both N- and O-glycans on fetuin were largely sialylated before labeling. Samples were separated on 4-20% gradient SDS-PAGE and imaged with silver staining (left panel) and a fluorescent imager (middle and right panels at different contrasts). The bands of fetuin corresponding to the neuraminidase treated samples appear to be darker than those without neuraminidase treatment because of the incorporation of Cy5. ST6GAL1 also showed some self-labeling in the presence of neuraminidase (indicted with an arrow in the right panel). M, Western Blot molecular marker. |
Labeling recombinant MUC16 using CMP-Cy5-Sialic Acid. Samples were labeled through O-glycans with Recombinant Human ST3GAL1 Protein (Catalog # 6905-GT) or N-glycans with Recombinant Human ST6GAL1 (aa 44-406) Protein (Catalog # 7620-GT). Control lanes contain all components but lack a labeling enzyme. Each experimental lane contained 1 μg of Recombinant Human CA125/MUC16 Protein (Catalog # 5609-MU), while the control lanes contained 2 μg of protein. Samples exhibited greater labeling in the presence of Recombinant C. perfringens Neuraminidase Protein (Catalog # 5080-NM) (Neu, indicated with + and - signs), suggesting that both N- and O-glycans on MUC16 were largely sialylated before labeling. In fact, by densitometry analysis on the fluorescent bands of MUC16 before and after neuraminidase treatment, the sialyation of the protein was measured to be 91.3% for O-glycans and 79.9 % for N-glycans. Samples were separated on 4-20% gradient SDS-PAGE and imaged with TCE Image (left panel) and a fluorescent imager (middle and right panels at different contrasts). The bands of MUC16 corresponding to the neuraminidase treated samples appear to be more heavily labeled than those without neuraminidase treatment because of the incorporation of Cy5. ST6GAL1 also showed some self-labeling in the presence of neuraminidase (indicted with an arrow in the middle panel). M, Western Blot molecular marker. |
Cellular glycan imaging of Cy5-Sialic Acid and CMP-Alexa Fluor® 488-Sialic Acid. The O- and N-glycans on HeLa cells were stained by incorporation of Cy5-Sialic Acid by Recombinant Human ST3GAL1 Protein (Catalog # 6905-GT) (red) and Alexa Fluor® 555 by Recombinant Human ST6GAL1 (aa 44-406) Protein (Catalog # 7620-GT) (green). HeLa cells on a 96-well plate were briefly treated with Recombinant M.viridifaciens Neuraminidase (Catalog # 5084-NM) to remove preexisting sialic acids. The treated cells were then labeled on O-glycans by ST3GAL1 in the presence of CMP-Cy5-Sialic Acid (Catalog # ES302) for 20 minutes. After the labeling, the solution was quickly removed by aspiration followed by washing two times with PBS. The cells were then subjected to the second labeling on N-glycans by ST6GAL1 in the presence of CMP-Alexa Fluor® 488-Sialic Acid (green). Afterwards, the cells were fixed and stained with DAPI (blue) in the presence of 0.5% Triton X 100 to reveal the cell nuclei. All four panels were from the same viewing area and imaged under different channels. These images show that O-glycans on HeLa cells display differential expression. For details of cell glycan imaging, please visit our paper in press: Wu. L. et al., (2020) Glycobiology 30:454-462. |
Table 1. Guideline for using CMP-Cy5-Sialic Acid for sialoglycan labeling and detection
Sialyltransferase | Catalog # | Substrate | CMP-Cy5-Sialic Acid Compatibility | Neuraminidase |
ST3GAL1 | 6905-GT | O-glycan | yes | rcpNeuraminidase (Catalog # 5080-NM) |
ST3GAL2 | 7275-GT | O-glycan | yes | |
ST3GAL3 (coming soon) | 10554-GT | N- and O-glycan | yes | |
ST3GAL4 (coming soon) | 10496-GT | N-glycan | yes | |
ST3GAL5 | 8454-GT | Glycolipid | Not tested | |
ST3GAL6 (coming soon) | N-glycan | yes | ||
ST6GAL1 | 7620-GT | N-glycan | yes | |
ST6GALNAC1 | 9154-GT | O-Glycan | yes | |
ST6GALNAC2 | 6468-GT | O-glycan | yes | |
ST6GALNAC4 | 6876-GT | O-glycan | Not tested | |
ST6GALNAc5 | 6715-GT | Ganglioside | Not tested | |
ST6GALNAC6 | 7425-GT | Ganglioside | Not tested | |
ST8SIA1 | 6716-GT | Polysialic Acid | yes | rmvNeuraminidase (Catalog # 5084-NM) |
ST8SIA2 | 6590-GT | yes | ||
ST8SIA4 | 7027-GT | yes | ||
ST8SIA6 | 9587-GT | yes |
Specifications
Product Datasheets
Assay Procedure
Sample Protocol for Direct Fluorescent Glycan Labeling with CMP-Cy5-Sialic Acid
Protocols are guidelines. Parameters need to be optimized by end users.
Materials
- Assay Buffer: 25 mM Tris, 10 mM MnCl2, pH 7.5
- Sample protein
- Recombinant sialyltransferases such as rhST3GAL1 (Catalog # 6905-GT) or rhST6GAL1 (Catalog # 7629-GT)
- Recombinant C. perfringens Neuraminidase (Catalog # 5080-NM)
- CMP-Cy5-Sialic Acid (R&D Systems®, Catalog # ES302)
- Protein sample loading dye
- SDS-PAGE and Western Blot reagents or equivalent
- Fluorescent imager in a far-red fluorescent channel
Assay Procedure
- Prepare a reaction mixture by combining 0.1 to 5 µg of a sample protein, 0.2 nmol CMP-Cy5-Sialic Acid, 0.5 µg of a sialyltransferase such as ST3GAL1 or ST6GAL1, 0.1 µg of rCpNeuraminidase in the final Assay Buffer with the final volume to 30 µL.
- Prepare a negative control by repeating above but omitting the sialyltranferase.
- Incubate all the reactions and controls at 37°C for 60 minutes.
- Stop the reactions and controls by adding appropriate volume of protein sample loading dye to each reaction.
- Separate the reactions and controls by SDS-PAGE.
- Image the gel with a fluorescent imager in a far-red fluorescent channel.
- Image the gel with trichloroethanol (TCE) imaging (if TCE is incorporated into the gel) or any other regular protein gel imaging method such as Coomassie® blue staining or silver staining.
Final Assay Conditions Per Reaction
- Sample protein: 0.1 to 5 µg
- CMP-Cy5-Sialic Acid: 0.2 nmol
- Sialyltransferase: 0.5 µg
- Neuraminidase: 0.1 µg
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