CMP-Cy5-Sialic Acid

Activated Sugar
Catalog # Availability Size / Price Qty
ES302-050
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CMP-Cy5-Sialic Acid Summary

 

Key Benefits

Learn more about Fluorescent Glycan Labeling and Detection

CMP-Cy5-Sialic Acid for sialic acid detection

Formula

C57H75N10O25P1S3

Molecular Weight

1427.42 Da

Formulation

Lyophilized with Tris, pH 8.0

Stability & Storage

Store the unopened product at < -20 °C. Good for 12 months from date of receipt.

 

Applications

  • Fluorescent labeling with Cy5 of free glycans as well as glycoproteins and glycolipids.
  • Fluorescent detection of specific glycan epitopes on the cell surface.
  • Quantitation of the sialylation level of specific glycans.
  • Together with CMP-Cy3-Sialic Acid, allows for dual labeling and detection of sialoglycans.

Key Features and Benefits:

  • Excitation at 649 nm and red emission at 671 nm.
  • The fluorescent dye Cy5 is conjugated to the C9 position of sialic acid.
  • Can be directly introduced into glycoproteins and glycolipids via various sialyltransferases.
  • Can be introduced to live cells for glycan imaging.
  • Has minimum side-effects on target molecules.
  • Very convenient and user-friendly.

For Details:
Wu et al., (2019) Glycobiology 29: 750-754
Wu et al., (2020) Glycobiology 30:454-462

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Enzymes and detection reagents

Data Examples

Titration of CMP-C9-Biotin-Sialic Acid on Asialofetuin

Labeling bovine fetuin (Fet) using CMP-Cy5-Sialic Acid
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Labeling bovine fetuin (Fet) using CMP-Cy5-Sialic Acid. Bovine fetuin was purified from crude fetuin by gel filtration. Samples of fetuin were labeled through O-glycans with Recombinant Human ST3GAL1 Protein (Catalog # 6905-GT) or N-glycans with Recombinant Human ST6GAL1 (aa 44-406) Protein (Catalog # 7620-GT). Control lanes contain all components but lack a labeling enzyme. Each lane contained 1 μg of fetuin except the controls. The control lanes contained 2 μg of protein. Samples exhibited greater labeling in the presence of Recombinant C. perfringens Neuraminidase Protein (Catalog # 5080-NM) (Neu, indicated with + and - signs), suggesting that both N- and O-glycans on fetuin were largely sialylated before labeling. Samples were separated on 4-20% gradient SDS-PAGE and imaged with silver staining (left panel) and a fluorescent imager (middle and right panels at different contrasts). The bands of fetuin corresponding to the neuraminidase treated samples appear to be darker than those without neuraminidase treatment because of the incorporation of Cy5. ST6GAL1 also showed some self-labeling in the presence of neuraminidase (indicted with an arrow in the right panel). M, Western Blot molecular marker.

Labeling recombinant MUC16 using CMP-Cy5-Sialic Acid
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Labeling recombinant MUC16 using CMP-Cy5-Sialic Acid. Samples were labeled through O-glycans with Recombinant Human ST3GAL1 Protein (Catalog # 6905-GT) or N-glycans with Recombinant Human ST6GAL1 (aa 44-406) Protein (Catalog # 7620-GT). Control lanes contain all components but lack a labeling enzyme. Each experimental lane contained 1 μg of Recombinant Human CA125/MUC16 Protein (Catalog # 5609-MU), while the control lanes contained 2 μg of protein. Samples exhibited greater labeling in the presence of Recombinant C. perfringens Neuraminidase Protein (Catalog # 5080-NM) (Neu, indicated with + and - signs), suggesting that both N- and O-glycans on MUC16 were largely sialylated before labeling. In fact, by densitometry analysis on the fluorescent bands of MUC16 before and after neuraminidase treatment, the sialyation of the protein was measured to be 91.3% for O-glycans and 79.9 % for N-glycans. Samples were separated on 4-20% gradient SDS-PAGE and imaged with TCE Image (left panel) and a fluorescent imager (middle and right panels at different contrasts). The bands of MUC16 corresponding to the neuraminidase treated samples appear to be more heavily labeled than those without neuraminidase treatment because of the incorporation of Cy5. ST6GAL1 also showed some self-labeling in the presence of neuraminidase (indicted with an arrow in the middle panel). M, Western Blot molecular marker.

Cellular glycan imaging of Cy5-Sialic Acid and CMP-Alexa Fluor® 488-Sialic Acid
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Cellular glycan imaging of Cy5-Sialic Acid and CMP-Alexa Fluor® 488-Sialic Acid. The O- and N-glycans on HeLa cells were stained by incorporation of Cy5-Sialic Acid by Recombinant Human ST3GAL1 Protein (Catalog # 6905-GT) (red) and Alexa Fluor® 555 by Recombinant Human ST6GAL1 (aa 44-406) Protein (Catalog # 7620-GT) (green). HeLa cells on a 96-well plate were briefly treated with Recombinant M.viridifaciens Neuraminidase (Catalog # 5084-NM) to remove preexisting sialic acids. The treated cells were then labeled on O-glycans by ST3GAL1 in the presence of CMP-Cy5-Sialic Acid (Catalog # ES302) for 20 minutes. After the labeling, the solution was quickly removed by aspiration followed by washing two times with PBS. The cells were then subjected to the second labeling on N-glycans by ST6GAL1 in the presence of CMP-Alexa Fluor® 488-Sialic Acid (green). Afterwards, the cells were fixed and stained with DAPI (blue) in the presence of 0.5% Triton X 100 to reveal the cell nuclei. All four panels were from the same viewing area and imaged under different channels. These images show that O-glycans on HeLa cells display differential expression. For details of cell glycan imaging, please visit our paper in press: Wu. L. et al., (2020) Glycobiology 30:454-462.

Table 1. Guideline for using CMP-Cy5-Sialic Acid for sialoglycan labeling and detection

Sialyltransferase Catalog # Substrate CMP-Cy5-Sialic Acid Compatibility Neuraminidase
ST3GAL1 6905-GT O-glycan yes rcpNeuraminidase (Catalog # 5080-NM)
ST3GAL2 7275-GT O-glycan yes  
ST3GAL3 (coming soon) 10554-GT N- and O-glycan yes  
ST3GAL4 (coming soon) 10496-GT N-glycan yes  
ST3GAL5 8454-GT Glycolipid Not tested  
ST3GAL6 (coming soon)   N-glycan yes  
ST6GAL1 7620-GT N-glycan yes  
ST6GALNAC1 9154-GT O-Glycan yes  
ST6GALNAC2 6468-GT O-glycan yes  
ST6GALNAC4 6876-GT O-glycan Not tested  
ST6GALNAc5 6715-GT Ganglioside Not tested  
ST6GALNAC6 7425-GT Ganglioside Not tested  
ST8SIA1 6716-GT Polysialic Acid yes rmvNeuraminidase (Catalog # 5084-NM)
ST8SIA2 6590-GT yes  
ST8SIA4 7027-GT yes  
ST8SIA6 9587-GT yes  

Specifications

Storage
Store the unopened product at -20 to -70 °C. Use a manual defrost freezer and avoid repeated freeze-thaw cycles. Do not use past expiration date.
Species
Multi-Species

Product Datasheets

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Assay Procedure

Sample Protocol for Direct Fluorescent Glycan Labeling with CMP-Cy5-Sialic Acid

Protocols are guidelines. Parameters need to be optimized by end users.

Materials

  • Assay Buffer: 25 mM Tris, 10 mM MnCl2, pH 7.5
  • Sample protein
  • Recombinant sialyltransferases such as rhST3GAL1 (Catalog # 6905-GT) or rhST6GAL1 (Catalog # 7629-GT)
  • Recombinant C. perfringens Neuraminidase (Catalog # 5080-NM)
  • CMP-Cy5-Sialic Acid (R&D Systems®, Catalog # ES302)
  • Protein sample loading dye
  • SDS-PAGE and Western Blot reagents or equivalent
  • Fluorescent imager in a far-red fluorescent channel

Assay Procedure

  1. Prepare a reaction mixture by combining 0.1 to 5 µg of a sample protein, 0.2 nmol CMP-Cy5-Sialic Acid, 0.5 µg of a sialyltransferase such as ST3GAL1 or ST6GAL1, 0.1 µg of rCpNeuraminidase in the final Assay Buffer with the final volume to 30 µL.
  2. Prepare a negative control by repeating above but omitting the sialyltranferase.
  3. Incubate all the reactions and controls at 37°C for 60 minutes.
  4. Stop the reactions and controls by adding appropriate volume of protein sample loading dye to each reaction.
  5. Separate the reactions and controls by SDS-PAGE.
  6. Image the gel with a fluorescent imager in a far-red fluorescent channel.
  7. Image the gel with trichloroethanol (TCE) imaging (if TCE is incorporated into the gel) or any other regular protein gel imaging method such as Coomassie® blue staining or silver staining.

Final Assay Conditions Per Reaction

  • Sample protein: 0.1 to 5 µg
  • CMP-Cy5-Sialic Acid:  0.2 nmol
  • Sialyltransferase:  0.5 µg
  • Neuraminidase: 0.1 µg

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